Whole-genome sequencing of C. difficile from a hospital setting - SRA

SRX24462914: Whole-genome sequencing of C. difficile from a hospital setting
1 ILLUMINA (Illumina MiSeq) run: 866,625 spots, 485.4M bases, 238.8Mb downloads

Design: Illumina library prep using Nextera DNA UD indices

Submitted by: Brigham and Women's Hospital

Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA

PRJNA278886 • SRP056445 • All experiments • All runs

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The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.

Sample:

SAMN41230119 • SRS21215839 • All experiments • All runs

Organism: Clostridioides difficile

Library:

Name: BWH-CDIFF-0000-0097-3267

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 866,625 spots, 485.4M bases, 238.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR28906468	866,625	485.4M	238.8Mb	2024-05-06

ID:: 32779007

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